Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs4735308 chr8:91688658 A/G cg16814680 chr8:91681699 NA -1.18 -35.63 -0.88 3.27E-123 Box Plot
BLCA rs4735309 chr8:91689543 C/G cg16814680 chr8:91681699 NA 1.17 36.13 0.88 5.62E-125 Box Plot
BLCA rs4772217 chr13:100181915 C/T cg25919922 chr13:100150906 NA -1.15 -32.06 -0.85 4.27E-110 Box Plot
BLCA rs4851187 chr2:99745860 G/T cg15544633 chr2:99771531 LIPT1;TSGA10 -1.18 -32.22 -0.86 1.02E-110 Box Plot
BLCA rs4952124 chr2:30677126 T/C cg12454169 chr2:30669597 LCLAT1 1.24 30.7 0.84 6.17E-105 Box Plot
BLCA rs4952148 chr2:30777908 T/G cg12454169 chr2:30669597 LCLAT1 1.25 31.12 0.85 1.46E-106 Box Plot
BLCA rs55746866 chr2:30704331 A/AG cg12454169 chr2:30669597 LCLAT1 1.26 31.94 0.85 1.18E-109 Box Plot
BLCA rs5781457 chr1:227183203 C/CCA cg10327440 chr1:227177885 CDC42BPA -1.14 -31.65 -0.85 1.45E-108 Box Plot
BLCA rs60992070 chr2:99781008 T/TA cg15544633 chr2:99771531 LIPT1;TSGA10 1.16 31.88 0.85 1.91E-109 Box Plot
BLCA rs61834001 chr1:227197411 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.78 -0.85 4.79E-109 Box Plot
BLCA rs61834006 chr1:227203214 A/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.17 -0.85 1.0E-106 Box Plot
BLCA rs6426559 chr1:227195876 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.89 -0.85 1.74E-109 Box Plot
BLCA rs6471245 chr8:91680519 A/G cg16814680 chr8:91681699 NA -1.19 -36.28 -0.88 1.65E-125 Box Plot
BLCA rs6471246 chr8:91692022 C/T cg16814680 chr8:91681699 NA -1.15 -32.82 -0.86 5.79E-113 Box Plot
BLCA rs6659424 chr1:227197875 A/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.71 -0.85 8.61E-109 Box Plot